Showing : homo sapiens • reset
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Understand the chromosome name in homo sapiens gene database
homo sapiens chromosome
updated 6.4 years ago by 67k • written 6.4 years ago by • 0
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5
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TxDb.Hsapiens.UCSC.hg19.knownGene - Error: subscript contains out-of-bounds indices for some Entrez codes
bioconductor genomicranges homo sapiens
updated 7.6 years ago by 67k • written 7.6 years ago by • 0
3
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5
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Error selecting Gene Symbol using Entrez ID via Homo.sapiens
homo sapiens
updated 9.5 years ago by ★ 7.2k • written 9.5 years ago by ▴ 50
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Weirdness with the human org.Hs.eg.db annotation database
annotationdbi homo sapiens
updated 9.9 years ago by ★ 7.2k • written 10.0 years ago by ▴ 220
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BSgenome
Homo sapiens BSgenome BSgenome Homo sapiens BSgenome BSgenome
updated 10.2 years ago by 67k • written 10.2 years ago by ▴ 290
2
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8
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2.3k
views
Genes annotated to GO:0031281 using org.Hs.eg.db
GO Homo sapiens GO Homo sapiens
updated 10.6 years ago by 67k • written 10.6 years ago by ★ 1.1k
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2
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GO-Pathways using RDAVIDWebService
Pathways Homo sapiens RDAVIDWebService Pathways Homo sapiens RDAVIDWebService
updated 10.6 years ago by ▴ 370 • written 10.6 years ago by ▴ 50
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edgeR dispersion value
Homo sapiens Homo sapiens
updated 11.3 years ago by ▴ 880 • written 11.3 years ago by ★ 13k
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getGEO vs GEOmetadb
Lung Homo sapiens Pseudomonas aeruginosa GEOmetadb Lung Homo sapiens Pseudomonas aeruginosa
11.3 years ago Jack Zhu ▴ 170
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3
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2.6k
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DEXSeq Issue
Alignment Annotation GO Homo sapiens TranscriptDb PROcess GenomicFeatures DEXSeq Alignment
updated 11.4 years ago by 42k • written 11.4 years ago by ▴ 150
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DEXSeq Problems
Alignment Homo sapiens PROcess Alignment Homo sapiens PROcess
updated 11.4 years ago by ★ 3.8k • written 11.4 years ago by ▴ 150
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views
Bioconductor Digest, Vol 119, Issue 1
Preprocessing Homo sapiens affy oligo RPA Preprocessing Homo sapiens affy oligo RPA
updated 11.8 years ago by ▴ 20 • written 11.8 years ago by ▴ 40
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer Homo sapiens affy Cancer Homo sapiens affy
updated 11.8 years ago by ▴ 20 • written 11.8 years ago by 25k
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Homo sapiens affy Homo sapiens affy
11.8 years ago Guest User ★ 13k
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Fwd: ASSIST on contrast matrix
Network Homo sapiens limma PROcess Network Homo sapiens limma PROcess
12.1 years ago Seyed Ahmad Mousavi ▴ 10
2
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1.2k
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How updated is hom.Hs.inp.db? (to get homologous mapping between mouse and human symbol)?
GO Homo sapiens GO Homo sapiens
updated 12.2 years ago by ★ 7.2k • written 12.2 years ago by ▴ 940
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views
bioMart
Homo sapiens biomaRt Homo sapiens biomaRt
12.7 years ago Bogdan ▴ 670
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1.2k
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custom SNPlocs / BSgenome package
SNP Annotation Organism Homo sapiens BSgenome SNPlocs BSgenome SNP Annotation Organism
updated 12.8 years ago by 16k • written 12.9 years ago by ▴ 100
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illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
13.0 years ago Mark Cowley ▴ 910
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1.3k
views
illuminaHumanv4 mappings
Cancer Homo sapiens Cancer Homo sapiens
updated 13.0 years ago by ★ 1.1k • written 13.0 years ago by ▴ 910
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topTable (fit) annotation
Annotation GO Homo sapiens annotate limma GEOquery Annotation GO Homo sapiens annotate
13.1 years ago Jing Huang ▴ 380
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1.3k
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working with ROOT and the xps problem
miRNA Microarray Annotation Homo sapiens probe xps miRNA Microarray Annotation probe xps
updated 13.6 years ago by ★ 3.9k • written 13.6 years ago by ★ 1.5k
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Ensembl mart release 57: Useful information
SNP GO Homo sapiens zebrafish SNP GO Homo sapiens zebrafish
14.6 years ago Rhoda Kinsella ▴ 660
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1.2k
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Is there anyway to map a set of EST id's to genBank accessions?
Annotation Homo sapiens annotate Annotation Homo sapiens annotate
updated 14.7 years ago by ▴ 610 • written 14.7 years ago by ▴ 10
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R: difference between "hsa-miR-xxx" and "hsa-miR-xxx*"
miRNA Homo sapiens biomaRt microRNA miRNA Homo sapiens biomaRt microRNA
15.0 years ago mauede@alice.it ▴ 870
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R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Cancer Homo sapiens biomaRt microRNA Transcription miRNA Cancer
15.0 years ago mauede@alice.it ▴ 870
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R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Homo sapiens biomaRt Transcription miRNA Homo sapiens biomaRt
updated 15.0 years ago by ▴ 580 • written 15.0 years ago by ▴ 870
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4
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biomaRt vs biomart.org
Homo sapiens biomaRt Homo sapiens biomaRt
15.0 years ago Tefina Paloma ▴ 220
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1.2k
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error with "retrain" method of gene2pathway package
Pathways GO Organism Homo sapiens hgu133plus2 gene2pathway Pathways GO Organism
updated 15.1 years ago by 67k • written 15.1 years ago by ▴ 340
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935
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Ensembl mart release 55: Useful information
Danio rerio Homo sapiens probe Danio rerio Homo sapiens probe
15.2 years ago Rhoda Kinsella ▴ 660
0
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1.0k
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Can I use such identifier to interrogate BioMart ?
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.3 years ago mauede@alice.it ▴ 870
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I: Help with symbol names mapping between miRecords and BioMart
GO Homo sapiens biomaRt GO Homo sapiens biomaRt
15.3 years ago mauede@alice.it ▴ 870
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820
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one more doubt about the (miRNA, gene-3UTR) pairs from Ensembl and BioMart
miRNA Homo sapiens miRNA Homo sapiens
15.3 years ago mauede@alice.it ▴ 870
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 15.3 years ago by ★ 3.4k • written 15.3 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
15.3 years ago michael watson IAH-C ★ 3.4k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 870
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1
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3.9k
views
how to get the miRNA, identifier from database Ensembl through biomaRt functions ???
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 870
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1.3k
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R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 870
0
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how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.3 years ago michael watson IAH-C ★ 3.4k
0
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1.3k
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how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.3 years ago mauede@alice.it ▴ 870
0
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2
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1.6k
views
how to find the validated pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens miRNA Homo sapiens
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 870
0
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1
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2.9k
views
How to find SNP names
SNP Homo sapiens SNPlocs SNP Homo sapiens SNPlocs
updated 15.3 years ago by 16k • written 15.3 years ago by ▴ 90
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2
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1.3k
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Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing Homo sapiens probe Ringo Preprocessing Homo sapiens probe Ringo
15.4 years ago JEAN-YVES SGRO ▴ 20
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3
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org.Hs.eg.db -- Entrez ID to Gene Symbol conversion
Cancer Homo sapiens convert Cancer Homo sapiens convert
updated 15.6 years ago by ▴ 10 • written 15.6 years ago by ★ 1.1k
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Annotation package for Agilent human CGH 44B
Annotation CGH Homo sapiens Annotation CGH Homo sapiens
15.6 years ago Daren Tan ▴ 190
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0
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Re: maPlot and defining controls
Microarray Homo sapiens Microarray Homo sapiens
20.9 years ago Chris Bye ▴ 30
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1
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986
views
Problems highlight control spots in MA plots
Microarray Homo sapiens Microarray Homo sapiens
updated 20.9 years ago by ▴ 920 • written 20.9 years ago by ▴ 20
47 results • Page 1 of 1
Recent ...
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Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20
Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …
Comment: miRTarRnaseq library by María Calvo • 0
Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…
Answer: heatmap with batch effect by James W. MacDonald 67k
You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …
Answer: how do I convert an Ilumn IDREF to a CPG loci by James W. MacDonald 67k
``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…
Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270
Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…
Votes
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Comment: Convert HGVS Representation back to Reference Genome Coordinates
Answer: How to control batch effect if Group and batch are same?
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